Detailed information of SNP:
|
SNP ID:
sf1116675052(Gbrowse)
Chromosome: chr11 Position: 16675052 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 93.58% | 6.42% |
| All Indica | 798 | 92.23% | 7.77% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116675052 | C->T | LOC_Os11g29530(LOC_Os11g29530.1) | INTRON |