Detailed information of SNP:
|
SNP ID:
sf1116676204(Gbrowse)
Chromosome: chr11 Position: 16676204 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1347 | 68.89% | 31.11% |
| All Indica | 773 | 94.05% | 5.95% |
| All Japonica | 459 | 24.84% | 75.16% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 370 | 95.68% | 4.32% |
| Indica II | 194 | 88.14% | 11.86% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 323 | 8.36% | 91.64% |
| Tropical Japonica | 81 | 71.60% | 28.40% |
| Japonica Intermediate | 55 | 52.73% | 47.27% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116676204 | T->C | INTERGENIC | None |