Detailed information of SNP:
|
SNP ID:
sf1116677697(Gbrowse)
Chromosome: chr11 Position: 16677697 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 92.42% | 7.58% |
| All Indica | 793 | 87.39% | 12.61% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 91.94% | 8.06% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116677697 | G->T | LOC_Os11g29540(LOC_Os11g29540.1) | Non-Synonymous SNP |