Detailed information of SNP:
|
SNP ID:
sf1116678774(Gbrowse)
Chromosome: chr11 Position: 16678774 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 64.58% | 35.42% |
| All Indica | 781 | 91.04% | 8.96% |
| All Japonica | 478 | 19.87% | 80.13% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 202 | 79.70% | 20.30% |
| Indica Intermediate | 207 | 97.58% | 2.42% |
| Temperate Japonica | 332 | 5.12% | 94.88% |
| Tropical Japonica | 85 | 60.00% | 40.00% |
| Japonica Intermediate | 61 | 44.26% | 55.74% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116678774 | A->G | INTERGENIC | None |