Detailed information of SNP:
|
SNP ID:
sf1116681306(Gbrowse)
Chromosome: chr11 Position: 16681306 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 51.77% | 48.23% |
| All Indica | 797 | 78.54% | 21.46% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 64 | 42.19% | 57.81% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 212 | 51.42% | 48.58% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116681306 | A->G | INTERGENIC | None |