Detailed information of SNP:
|
SNP ID:
sf1116681657(Gbrowse)
Chromosome: chr11 Position: 16681657 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 74.10% | 25.90% |
| All Indica | 798 | 80.58% | 19.42% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 57.08% | 42.92% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116681657 | T->C | INTERGENIC | None |