Detailed information of SNP:
|
SNP ID:
sf1116684532(Gbrowse)
Chromosome: chr11 Position: 16684532 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 82.26% | 17.74% |
| All Indica | 784 | 69.13% | 30.87% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 368 | 54.35% | 45.65% |
| Indica II | 207 | 94.69% | 5.31% |
| Indica Intermediate | 209 | 69.86% | 30.14% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116684532 | C->A | LOC_Os11g29560(LOC_Os11g29560.1) | INTRON |