Detailed information of SNP:
|
SNP ID:
sf1116685042(Gbrowse)
Chromosome: chr11 Position: 16685042 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 79.49% | 20.51% |
| All Indica | 792 | 64.52% | 35.48% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 373 | 47.72% | 52.28% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116685042 | C->T | LOC_Os11g29560(LOC_Os11g29560.1) | SNPs that introduce stop codons |