Detailed information of SNP:
|
SNP ID:
sf1116685081(Gbrowse)
Chromosome: chr11 Position: 16685081 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 78.39% | 21.61% |
| All Indica | 775 | 62.71% | 37.29% |
| All Japonica | 472 | 99.36% | 0.64% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 366 | 44.81% | 55.19% |
| Indica II | 201 | 93.53% | 6.47% |
| Indica Intermediate | 208 | 64.42% | 35.58% |
| Temperate Japonica | 328 | 99.09% | 0.91% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116685081 | C->T | LOC_Os11g29560(LOC_Os11g29560.1) | Non-Synonymous SNP |