Detailed information of SNP:
|
SNP ID:
sf1116689955(Gbrowse)
Chromosome: chr11 Position: 16689955 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1328 | 72.74% | 27.26% |
| All Indica | 723 | 57.40% | 42.60% |
| All Japonica | 493 | 96.15% | 3.85% |
| Aus | 60 | 68.33% | 31.67% |
| Indica I | 332 | 49.70% | 50.30% |
| Indica II | 192 | 75.00% | 25.00% |
| Indica Intermediate | 199 | 53.27% | 46.73% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116689955 | G->T | LOC_Os11g29570(LOC_Os11g29570.1) | Non-Synonymous SNP |