Detailed information of SNP:
|
SNP ID:
sf1116690171(Gbrowse)
Chromosome: chr11 Position: 16690171 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1293 | 60.40% | 39.60% |
| All Indica | 699 | 40.34% | 59.66% |
| All Japonica | 484 | 93.39% | 6.61% |
| Aus | 56 | 35.71% | 64.29% |
| Indica I | 320 | 37.81% | 62.19% |
| Indica II | 190 | 51.58% | 48.42% |
| Indica Intermediate | 189 | 33.33% | 66.67% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 88 | 77.27% | 22.73% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116690171 | T->C | LOC_Os11g29570(LOC_Os11g29570.1) | Non-Synonymous SNP |