Detailed information of SNP:
|
SNP ID:
sf1116691367(Gbrowse)
Chromosome: chr11 Position: 16691367 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 50.18% | 49.82% |
| All Indica | 782 | 27.88% | 72.12% |
| All Japonica | 488 | 88.93% | 11.07% |
| Aus | 62 | 25.81% | 74.19% |
| Indica I | 372 | 21.77% | 78.23% |
| Indica II | 206 | 32.52% | 67.48% |
| Indica Intermediate | 204 | 34.31% | 65.69% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 88 | 67.05% | 32.95% |
| Japonica Intermediate | 65 | 78.46% | 21.54% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116691367 | G->A | LOC_Os11g29570(LOC_Os11g29570.1) | Synonymous |