Detailed information of SNP:
|
SNP ID:
sf1116692558(Gbrowse)
Chromosome: chr11 Position: 16692558 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 96.09% | 3.91% |
| All Indica | 766 | 94.65% | 5.35% |
| All Japonica | 493 | 97.97% | 2.03% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 92.29% | 7.71% |
| Indica II | 202 | 98.02% | 1.98% |
| Indica Intermediate | 201 | 95.52% | 4.48% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116692558 | C->T | INTERGENIC | None |