Detailed information of SNP:
|
SNP ID:
sf1116697908(Gbrowse)
Chromosome: chr11 Position: 16697908 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 93.97% | 6.03% |
| All Indica | 794 | 92.44% | 7.56% |
| All Japonica | 495 | 95.76% | 4.24% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116697908 | G->A | INTERGENIC | None |