Detailed information of SNP:
|
SNP ID:
sf1116700851(Gbrowse)
Chromosome: chr11 Position: 16700851 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 51.04% | 48.96% |
| All Indica | 784 | 22.83% | 77.17% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 62 | 69.35% | 30.65% |
| Indica I | 375 | 12.27% | 87.73% |
| Indica II | 204 | 54.41% | 45.59% |
| Indica Intermediate | 205 | 10.73% | 89.27% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116700851 | T->C | LOC_Os11g29589(LOC_Os11g29589.1) | INTRON |