Detailed information of SNP:
|
SNP ID:
sf1116706086(Gbrowse)
Chromosome: chr11 Position: 16706086 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 94.69% | 5.31% |
| All Indica | 760 | 92.24% | 7.76% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 358 | 94.41% | 5.59% |
| Indica II | 203 | 91.63% | 8.37% |
| Indica Intermediate | 199 | 88.94% | 11.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116706086 | C->T | LOC_Os11g29610(LOC_Os11g29610.1) | INTRON |