Detailed information of SNP:
|
SNP ID:
sf1116710844(Gbrowse)
Chromosome: chr11 Position: 16710844 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 72.67% | 27.33% |
| All Indica | 797 | 54.96% | 45.04% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 373 | 43.16% | 56.84% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116710844 | C->G | INTERGENIC | None |