Detailed information of SNP:
|
SNP ID:
sf1116711147(Gbrowse)
Chromosome: chr11 Position: 16711147 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.73% | 40.27% |
| All Indica | 794 | 60.45% | 39.55% |
| All Japonica | 497 | 56.54% | 43.46% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 57.07% | 42.93% |
| Indica II | 210 | 68.57% | 31.43% |
| Indica Intermediate | 209 | 58.37% | 41.63% |
| Temperate Japonica | 335 | 81.19% | 18.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116711147 | G->A | INTERGENIC | None |