Detailed information of SNP:



SNP ID: sf1116711512(Gbrowse)

Chromosome: chr11

Position: 16711512
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1416 84.39% 15.61%
All Indica797 79.42% 20.58%
All Japonica497 99.80% 0.20%
Aus67 32.84% 67.16%
Indica I375 97.87% 2.13%
Indica II211 41.23% 58.77%
Indica Intermediate211 84.83% 15.17%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 75.61% 24.39%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1116711512 T->A INTERGENIC None