Detailed information of SNP:
|
SNP ID:
sf1116715743(Gbrowse)
Chromosome: chr11 Position: 16715743 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.44% | 21.56% |
| All Indica | 799 | 67.21% | 32.79% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 67.20% | 32.80% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116715743 | G->A | LOC_Os11g29630(LOC_Os11g29630.1) | INTRON |