Detailed information of SNP:
|
SNP ID:
sf1116729652(Gbrowse)
Chromosome: chr11 Position: 16729652 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 93.23% | 6.77% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116729652 | G->A | INTERGENIC | None |