Detailed information of SNP:
|
SNP ID:
sf1116733721(Gbrowse)
Chromosome: chr11 Position: 16733721 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 86.97% | 13.03% |
| All Indica | 772 | 82.25% | 17.75% |
| All Japonica | 494 | 93.93% | 6.07% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 97.03% | 2.97% |
| Indica II | 202 | 50.99% | 49.01% |
| Indica Intermediate | 200 | 86.50% | 13.50% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116733721 | G->A | INTERGENIC | None |