Detailed information of SNP:
|
SNP ID:
sf1116744118(Gbrowse)
Chromosome: chr11 Position: 16744118 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 73.07% | 26.93% |
| All Indica | 796 | 59.05% | 40.95% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 211 | 41.23% | 58.77% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116744118 | A->G | INTERGENIC | None |