Detailed information of SNP:
|
SNP ID:
sf1116747133(Gbrowse)
Chromosome: chr11 Position: 16747133 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 73.36% | 26.64% |
| All Indica | 799 | 61.83% | 38.17% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116747133 | A->C | INTERGENIC | None |