Detailed information of SNP:
|
SNP ID:
sf1116774432(Gbrowse)
Chromosome: chr11 Position: 16774432 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 89.34% | 10.66% |
| All Indica | 798 | 83.71% | 16.29% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116774432 | A->G | INTERGENIC | None |