Detailed information of SNP:
|
SNP ID:
sf1116778035(Gbrowse)
Chromosome: chr11 Position: 16778035 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 72.66% | 27.34% |
| All Indica | 790 | 90.00% | 10.00% |
| All Japonica | 496 | 40.32% | 59.68% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 368 | 83.15% | 16.85% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116778035 | G->C | INTERGENIC | None |