Detailed information of SNP:
|
SNP ID:
sf1116779164(Gbrowse)
Chromosome: chr11 Position: 16779164 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 79.22% | 20.78% |
| All Indica | 798 | 72.31% | 27.69% |
| All Japonica | 495 | 96.97% | 3.03% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116779164 | G->A | LOC_Os11g29730(LOC_Os11g29730.1) | INTRON |