Detailed information of SNP:
|
SNP ID:
sf1116784533(Gbrowse)
Chromosome: chr11 Position: 16784533 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 79.07% | 20.93% |
| All Indica | 794 | 69.02% | 30.98% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 65.77% | 34.23% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116784533 | G->A | INTERGENIC | None |