Detailed information of SNP:
|
SNP ID:
sf1116789849(Gbrowse)
Chromosome: chr11 Position: 16789849 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 75.19% | 24.81% |
| All Indica | 795 | 63.27% | 36.73% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 63.81% | 36.19% |
| Indica II | 212 | 70.75% | 29.25% |
| Indica Intermediate | 210 | 54.76% | 45.24% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116789849 | C->T | INTERGENIC | None |