Detailed information of SNP:
|
SNP ID:
sf1116832447(Gbrowse)
Chromosome: chr11 Position: 16832447 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 72.55% | 27.45% |
| All Indica | 795 | 81.64% | 18.36% |
| All Japonica | 495 | 57.98% | 42.02% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 334 | 82.93% | 17.07% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116832447 | G->A | INTERGENIC | None |