Detailed information of SNP:
|
SNP ID:
sf1116891278(Gbrowse)
Chromosome: chr11 Position: 16891278 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 97.23% | 2.77% |
| All Indica | 763 | 96.07% | 3.93% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 57 | 85.96% | 14.04% |
| Indica I | 358 | 97.77% | 2.23% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 199 | 93.47% | 6.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116891278 | G->A | LOC_Os11g29880(LOC_Os11g29880.1) | Non-Synonymous SNP |