Detailed information of SNP:
|
SNP ID:
sf1116892705(Gbrowse)
Chromosome: chr11 Position: 16892705 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 96.37% | 3.63% |
| All Indica | 766 | 95.69% | 4.31% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 62 | 77.42% | 22.58% |
| Indica I | 361 | 97.51% | 2.49% |
| Indica II | 202 | 94.55% | 5.45% |
| Indica Intermediate | 203 | 93.60% | 6.40% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116892705 | G->A | LOC_Os11g29880(LOC_Os11g29880.1) | Non-Synonymous SNP |