Detailed information of SNP:
|
SNP ID:
sf1116897130(Gbrowse)
Chromosome: chr11 Position: 16897130 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 92.13% | 7.87% |
| All Indica | 742 | 86.79% | 13.21% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 83.86% | 16.14% |
| Indica II | 199 | 89.45% | 10.55% |
| Indica Intermediate | 196 | 89.29% | 10.71% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116897130 | C->T | INTERGENIC | None |