Detailed information of SNP:
|
SNP ID:
sf1116920934(Gbrowse)
Chromosome: chr11 Position: 16920934 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.39% | 22.61% |
| All Indica | 797 | 73.15% | 26.85% |
| All Japonica | 495 | 92.93% | 7.07% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 73.26% | 26.74% |
| Indica II | 212 | 76.42% | 23.58% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116920934 | G->A | LOC_Os11g29920(LOC_Os11g29920.1) | Synonymous |