Detailed information of SNP:
|
SNP ID:
sf1116933878(Gbrowse)
Chromosome: chr11 Position: 16933878 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 80.23% | 19.77% |
| All Indica | 795 | 88.68% | 11.32% |
| All Japonica | 495 | 63.43% | 36.57% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 84.99% | 15.01% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 333 | 49.25% | 50.75% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116933878 | T->C | LOC_Os11g29940(LOC_Os11g29940.1) | INTRON |