Detailed information of SNP:
|
SNP ID:
sf1116935922(Gbrowse)
Chromosome: chr11 Position: 16935922 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 88.98% | 11.02% |
| All Indica | 786 | 81.68% | 18.32% |
| All Japonica | 488 | 98.98% | 1.02% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 74.66% | 25.34% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 205 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 85 | 95.29% | 4.71% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116935922 | C->T | INTERGENIC | None |