Detailed information of SNP:
|
SNP ID:
sf1116955368(Gbrowse)
Chromosome: chr11 Position: 16955368 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 81.61% | 18.39% |
| All Indica | 770 | 93.77% | 6.23% |
| All Japonica | 479 | 58.25% | 41.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 92.98% | 7.02% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 333 | 48.35% | 51.65% |
| Tropical Japonica | 82 | 78.05% | 21.95% |
| Japonica Intermediate | 64 | 84.38% | 15.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116955368 | T->C | INTERGENIC | None |