Detailed information of SNP:
|
SNP ID:
sf1116956762(Gbrowse)
Chromosome: chr11 Position: 16956762 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 80.71% | 19.29% |
| All Indica | 795 | 95.47% | 4.53% |
| All Japonica | 487 | 53.39% | 46.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 91.40% | 8.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 55.89% | 44.11% |
| Tropical Japonica | 92 | 51.09% | 48.91% |
| Japonica Intermediate | 64 | 43.75% | 56.25% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116956762 | C->T | INTERGENIC | None |