Detailed information of SNP:
|
SNP ID:
sf1116958882(Gbrowse)
Chromosome: chr11 Position: 16958882 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 87.08% | 12.92% |
| All Indica | 777 | 81.85% | 18.15% |
| All Japonica | 473 | 95.56% | 4.44% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 366 | 75.41% | 24.59% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 199 | 77.89% | 22.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 76 | 78.95% | 21.05% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116958882 | T->C | INTERGENIC | None |