Detailed information of SNP:
|
SNP ID:
sf1116965015(Gbrowse)
Chromosome: chr11 Position: 16965015 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 91.60% | 8.40% |
| All Indica | 798 | 88.22% | 11.78% |
| All Japonica | 496 | 95.97% | 4.03% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 86.90% | 13.10% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116965015 | C->T | INTERGENIC | None |