Detailed information of SNP:
|
SNP ID:
sf1116978549(Gbrowse)
Chromosome: chr11 Position: 16978549 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 82.39% | 17.61% |
| All Indica | 794 | 78.34% | 21.66% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 373 | 93.03% | 6.97% |
| Indica II | 212 | 57.55% | 42.45% |
| Indica Intermediate | 209 | 73.21% | 26.79% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116978549 | C->T | LOC_Os11g30000(LOC_Os11g30000.1) | INTRON |