Detailed information of SNP:
|
SNP ID:
sf1116979428(Gbrowse)
Chromosome: chr11 Position: 16979428 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 91.03% | 8.97% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 482 | 74.27% | 25.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 66.36% | 33.64% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116979428 | T->G | LOC_Os11g30000(LOC_Os11g30000.1) | Non-Synonymous SNP |