Detailed information of SNP:
|
SNP ID:
sf1116986994(Gbrowse)
Chromosome: chr11 Position: 16986994 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 65.91% | 34.09% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 495 | 13.94% | 86.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 6.31% | 93.69% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116986994 | G->C | INTERGENIC | None |