Detailed information of SNP:
|
SNP ID:
sf1116996306(Gbrowse)
Chromosome: chr11 Position: 16996306 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 54.58% | 45.42% |
| All Indica | 791 | 79.77% | 20.23% |
| All Japonica | 496 | 8.06% | 91.94% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 79.95% | 20.05% |
| Indica II | 210 | 79.52% | 20.48% |
| Indica Intermediate | 207 | 79.71% | 20.29% |
| Temperate Japonica | 334 | 4.79% | 95.21% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116996306 | G->A | LOC_Os11g30020(LOC_Os11g30020.1) | INTRON |