Detailed information of SNP:
|
SNP ID:
sf1116998869(Gbrowse)
Chromosome: chr11 Position: 16998869 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 53.57% | 46.43% |
| All Indica | 774 | 36.95% | 63.05% |
| All Japonica | 494 | 87.45% | 12.55% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 372 | 41.67% | 58.33% |
| Indica II | 206 | 31.55% | 68.45% |
| Indica Intermediate | 196 | 33.67% | 66.33% |
| Temperate Japonica | 332 | 95.18% | 4.82% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116998869 | A->G | INTERGENIC | None |