Detailed information of SNP:
|
SNP ID:
sf1117010695(Gbrowse)
Chromosome: chr11 Position: 17010695 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1265 | 90.91% | 9.09% |
| All Indica | 784 | 88.90% | 11.10% |
| All Japonica | 361 | 92.52% | 7.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 95.28% | 4.72% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 234 | 91.03% | 8.97% |
| Tropical Japonica | 76 | 93.42% | 6.58% |
| Japonica Intermediate | 51 | 98.04% | 1.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117010695 | C->T | INTERGENIC | None |