Detailed information of SNP:
|
SNP ID:
sf1117011780(Gbrowse)
Chromosome: chr11 Position: 17011780 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 84.20% | 15.80% |
| All Indica | 798 | 81.70% | 18.30% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117011780 | A->T | INTERGENIC | None |