Detailed information of SNP:
|
SNP ID:
sf1117014918(Gbrowse)
Chromosome: chr11 Position: 17014918 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 85.12% | 14.88% |
| All Indica | 798 | 83.46% | 16.54% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117014918 | G->T | LOC_Os11g30050(LOC_Os11g30050.1) | INTRON |