Detailed information of SNP:



SNP ID: sf1117018738(Gbrowse)

Chromosome: chr11

Position: 17018738
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 91.61% 8.39%
All Indica798 87.34% 12.66%
All Japonica497 99.80% 0.20%
Aus67 97.01% 2.99%
Indica I375 84.80% 15.20%
Indica II213 89.20% 10.80%
Indica Intermediate210 90.00% 10.00%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 50.00% 50.00%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1117018738 G->A LOC_Os11g30060(LOC_Os11g30060.1) Non-Synonymous SNP