Detailed information of SNP:
|
SNP ID:
sf1117024111(Gbrowse)
Chromosome: chr11 Position: 17024111 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 94.95% | 5.05% |
| All Indica | 787 | 91.23% | 8.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 206 | 80.58% | 19.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117024111 | G->A | INTERGENIC | None |